› 1wzb

X-ray diffraction
1.5Å resolution

Crystal structure of the collagen triple helix model [{HYP(R)-HYP(R)-GLY}10]3

Released:
DOI: 10.2210/pdb1wzb/pdb
PDB entry 1wzb coloured by chain, front view.
PDB entry 1wzb coloured by chain, side view.
PDB entry 1wzb coloured by chain, top view.
Source organism: Saimiriine gammaherpesvirus 2
Primary publication:
Effect of hydration on the stability of the collagen-like triple-helical structure of [4(R)-hydroxyprolyl-4(R)-hydroxyprolylglycine]10.
Kawahara K, Nishi Y, Nakamura S, Uchiyama S, Nishiuchi Y, Nakazawa T, Ohkubo T, Kobayashi Y
Biochemistry 44 15812-22 (2005)
PMID: 16313184

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-182342 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Saimiri transformation-associated protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 30 amino acids
Theoretical weight: 2.85 KDa
Source organism: Saimiriine gammaherpesvirus 2
Expression system: Not provided
UniProt:
  • Canonical: Q80BK4 (Residues: 37-66; Coverage: 30%)
Gene name: stpC
Sequence domains: Collagen triple helix repeat (20 copies)

Ligands and Environments

No bound ligands
1 modified residue:
Ligand HYP 60 x HYP

Experiments and Validation Details

Entry percentile scores
Spacegroup: P21
Unit cell:
a: 18.405Å b: 19.113Å c: 90.961Å
α: 90° β: 94.26° γ: 90°
R-values:
R R work R free
0.188 0.17 0.201
Expression system: Not provided

Quick links

Citations

7 review citations

Collagen structure and stability.
Shoulders et al. (2009)
6 more

3 mentions without citation

Determination of collagen nanostructure from second-order susceptibility tensor analysis.
Su et al. (2011)
2 more