› 1x25

X-ray diffraction
2Å resolution

Crystal Structure of a Member of YjgF Family from Sulfolobus Tokodaii (ST0811)

Released:
DOI: 10.2210/pdb1x25/pdb
PDB entry 1x25 coloured by chain, front view.
PDB entry 1x25 coloured by chain, side view.
PDB entry 1x25 coloured by chain, top view.
Source organism: Sulfurisphaera tokodaii str. 7
Primary publication:
Crystal structure of the YjgF/YER057c/UK114 family protein from the hyperthermophilic archaeon Sulfolobus tokodaii strain 7.
Miyakawa T, Lee WC, Hatano K, Kato Y, Sawano Y, Miyazono K, Nagata K, Tanokura M
Proteins 62 557-61 (2006)
PMID: 16323205

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assemblies composition:
homo trimer
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-188832 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
RutC family protein STK_08110 Chains: A, B
Molecule details ›
Chains: A, B
Length: 128 amino acids
Theoretical weight: 14.16 KDa
Source organism: Sulfurisphaera tokodaii str. 7
Expression system: Escherichia coli
UniProt:
  • Canonical: Q973T6 (Residues: 1-125; Coverage: 100%)
Gene name: STK_08110
Sequence domains: Endoribonuclease L-PSP
Structure domains: RutC-like

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU FR-E
Spacegroup: R3
Unit cell:
a: 54.98Å b: 54.98Å c: 221.557Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.148 0.146 0.188
Expression system: Escherichia coli

Quick links

Citations

7 citation in other articles

Conserved YjgF protein family deaminates reactive enamine/imine intermediates of pyridoxal 5'-phosphate (PLP)-dependent enzyme reactions.
Lambrecht et al. (2012)
6 more

3 mentions without citation

RidA Proteins Protect against Metabolic Damage by Reactive Intermediates.
Irons et al. (2020)
2 more