› 1x8d

X-ray diffraction
1.8Å resolution

Crystal structure of E. coli YiiL protein containing L-rhamnose

Released:
DOI: 10.2210/pdb1x8d/pdb
PDB entry 1x8d coloured by chain, front view.
PDB entry 1x8d coloured by chain, side view.
PDB entry 1x8d coloured by chain, top view.
Source organism: Escherichia coli
Primary publication:
Structural insights into the monosaccharide specificity of Escherichia coli rhamnose mutarotase.
Ryu KS, Kim JI, Cho SJ, Park D, Park C, Cheong HK, Lee JO, Choi BS
J Mol Biol 349 153-62 (2005)
PMID: 15876375

Function and Biology Details

Reaction catalysed: 
Alpha-L-rhamnopyranose = beta-L-rhamnopyranose
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-152214 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
L-rhamnose mutarotase Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 104 amino acids
Theoretical weight: 12.28 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P32156 (Residues: 1-104; Coverage: 100%)
Gene names: JW3872, b3901, rhaM, yiiL
Sequence domains: L-rhamnose mutarotase
Structure domains: Alpha-Beta Plaits

Ligands and Environments

1 bound ligand:
Ligand RNS 4 x RNS
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU, null
Spacegroup: P21
Unit cell:
a: 71.358Å b: 51.311Å c: 80.492Å
α: 90° β: 107.82° γ: 90°
R-values:
R R work R free
0.235 0.235 0.279
Expression system: Escherichia coli BL21(DE3)

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Citations

15 citation in other articles

A single polymorphism disrupts the killer Ig-like receptor 2DL2/2DL3 D1 domain.
VandenBussche et al. (2006)
14 more

2 mentions without citation

Specialized Dynamical Properties of Promiscuous Residues Revealed by Simulated Conformational Ensembles.
Fornili et al. (2013)
1 more