› 1xjr

X-ray diffraction
2.7Å resolution

The Structure of a Rigorously Conserved RNA Element Within the SARS Virus Genome

Released:
DOI: 10.2210/pdb1xjr/pdb
PDB entry 1xjr coloured by chain, front view.
PDB entry 1xjr coloured by chain, side view.
PDB entry 1xjr coloured by chain, top view.
Source organism: Severe acute respiratory syndrome-related coronavirus
Primary publication:
The structure of a rigorously conserved RNA element within the SARS virus genome.
Robertson MP, Igel H, Baertsch R, Haussler D, Ares M, Scott WG
PLoS Biol 3 e5 (2005)
PMID: 15630477

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195851 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
s2m RNA Chain: A
Molecule details ›
Chain: A
Length: 47 nucleotides
Theoretical weight: 15.44 KDa
Source organism: Severe acute respiratory syndrome-related coronavirus
Expression system: Not provided
Sequence domains: Coronavirus 3' stem-loop II-like motif (s2m)

Ligands and Environments

1 bound ligand:
Ligand MG 2 x MG
1 modified residue:
Ligand GTP 1 x GTP

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-1
Spacegroup: P6522
Unit cell:
a: 93.218Å b: 93.218Å c: 128.109Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.232 0.231 0.243
Expression system: Not provided

Quick links

Citations

14 review citations

A contemporary view of coronavirus transcription.
Sawicki et al. (2007)
13 more

31 mentions without citation

From SARS to MERS: 10 years of research on highly pathogenic human coronaviruses.
Hilgenfeld et al. (2013)
30 more