› 1y0z

X-ray diffraction
2.4Å resolution

X-ray structure of gene product from Arabidopsis thaliana At3g21360

Released:
DOI: 10.2210/pdb1y0z/pdb
PDB entry 1y0z coloured by chain, front view.
PDB entry 1y0z coloured by chain, side view.
PDB entry 1y0z coloured by chain, top view.
Source organism: Arabidopsis thaliana
Primary publication:
The structure at 2.4 A resolution of the protein from gene locus At3g21360, a putative Fe(II)/2-oxoglutarate-dependent enzyme from Arabidopsis thaliana.
Bitto E, Bingman CA, Allard ST, Wesenberg GE, Aceti DJ, Wrobel RL, Frederick RO, Sreenath H, Vojtik FC, Jeon WB, Newman CS, Primm J, Sussman MR, Fox BG, Markley JL, Phillips GN
Acta Crystallogr Sect F Struct Biol Cryst Commun 61 469-72 (2005)
PMID: 16511070

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-192278 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Clavaminate synthase-like protein At3g21360 Chains: A, B
Molecule details ›
Chains: A, B
Length: 330 amino acids
Theoretical weight: 37.26 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9LIG0 (Residues: 1-330; Coverage: 100%)
Gene names: At3g21360, MHC9_4
Sequence domains: Taurine catabolism dioxygenase TauD, TfdA family
Structure domains: Clavaminate synthase-like

Ligands and Environments

2 bound ligands:
Ligand SO4 4 x SO4
Ligand FE2 2 x FE2
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM, APS BEAMLINE 14-ID-B
Spacegroup: C2
Unit cell:
a: 145.276Å b: 61.094Å c: 114.681Å
α: 90° β: 121.68° γ: 90°
R-values:
R R work R free
0.193 0.193 0.241
Expression system: Escherichia coli

Quick links

Citations

1 review citation

Structural studies on 2-oxoglutarate oxygenases and related double-stranded beta-helix fold proteins.
Clifton et al. (2006)
3 other articles

2 mentions without citation

Creating protein models from electron-density maps using particle-filtering methods.
DiMaio et al. (2007)
1 more