› 1y3s

X-ray diffraction
2.25Å resolution

HIV-1 DIS RNA subtype F- MPD form

Released:
DOI: 10.2210/pdb1y3s/pdb
PDB entry 1y3s coloured by chain, front view.
PDB entry 1y3s coloured by chain, side view.
PDB entry 1y3s coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Polymorphism of bulged-out residues in HIV-1 RNA DIS kissing complex and structure comparison with solution studies.
Ennifar E, Dumas P
J Mol Biol 356 771-82 (2006)
PMID: 16403527

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196252 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' Chains: A, B
Molecule details ›
Chains: A, B
Length: 23 nucleotides
Theoretical weight: 7.47 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

2 bound ligands:
Ligand K 3 x K
Ligand MG 2 x MG
1 modified residue:
Ligand 5BU 2 x 5BU

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: C2221
Unit cell:
a: 27.243Å b: 117.794Å c: 94.587Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.243 0.243 0.262
Expression system: Not provided

Quick links

Citations

6 review citations

RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.
Šponer et al. (2018)
5 more

2 mentions without citation

Structural and computational studies of HIV-1 RNA.
Levintov et al. (2024)
1 more