› 1yj8

X-ray diffraction
2.85Å resolution

Initial structural analysis of Plasmodium falciparum Glycerol-3-phosphate dehydrogenase

Released:
DOI: 10.2210/pdb1yj8/pdb
PDB entry 1yj8 coloured by chain, front view.
PDB entry 1yj8 coloured by chain, side view.
PDB entry 1yj8 coloured by chain, top view.
Source organism: Plasmodium falciparum 3D7
Entry authors: Robien MA, Hol WGJ, Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

Function and Biology Details

Reaction catalysed: 
sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-184692 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glycerol-3-phosphate dehydrogenase [NAD(+)] Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 375 amino acids
Theoretical weight: 42.31 KDa
Source organism: Plasmodium falciparum 3D7
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8I5P5 (Residues: 1-367; Coverage: 100%)
Gene name: PF3D7_1216200
Sequence domains:
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-3, ALS BEAMLINE 8.2.1
Spacegroup: P6322
Unit cell:
a: 177.455Å b: 177.455Å c: 232.699Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.237 0.236 0.256
Expression system: Escherichia coli

Quick links