› 1yn1

Solution NMR

Solution structure of the VS ribozyme stem-loop V in the presence of MgCl2

Released:
DOI: 10.2210/pdb1yn1/pdb
PDB entry 1yn1 coloured by chain, ensemble of 11 models, front view.
PDB entry 1yn1 coloured by chain, ensemble of 11 models, side view.
PDB entry 1yn1 coloured by chain, ensemble of 11 models, top view.
Source organism: Synthetic construct
Primary publication:
NMR structure of varkud satellite ribozyme stem-loop V in the presence of magnesium ions and localization of metal-binding sites.
Campbell DO, Bouchard P, Desjardins G, Legault P
Biochemistry 45 10591-605 (2006)
PMID: 16939211

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196267 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
VS RIBOZYME STEM-LOOP V Chain: A
Molecule details ›
Chain: A
Length: 17 nucleotides
Theoretical weight: 5.42 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: SIMULATED ANNEALING; MOLECULAR DYNAMICS
Expression system: Not provided

Quick links

Citations

3 review citations

RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.
Šponer et al. (2018)
2 more

4 mentions without citation

Insights into RNA structure and dynamics from recent NMR and X-ray studies of the Neurospora Varkud satellite ribozyme.
Dagenais et al. (2017)
3 more