1yq9

X-ray diffraction
2.35Å resolution

Structure of the unready oxidized form of [NiFe] hydrogenase

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-146396 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Periplasmic [NiFe] hydrogenase small subunit Chains: A, B
Molecule details ›
Chains: A, B
Length: 264 amino acids
Theoretical weight: 28.35 KDa
Source organism: Megalodesulfovibrio gigas
UniProt:
  • Canonical: P12943 (Residues: 25-288; Coverage: 100%)
Gene name: hydA
Sequence domains:
Structure domains:
Periplasmic [NiFe] hydrogenase large subunit Chains: H, I
Molecule details ›
Chains: H, I
Length: 536 amino acids
Theoretical weight: 59.66 KDa
Source organism: Megalodesulfovibrio gigas
UniProt:
  • Canonical: P12944 (Residues: 1-536; Coverage: 97%)
Gene name: hydB
Sequence domains: Nickel-dependent hydrogenase
Structure domains: Cytochrome-c3 Hydrogenase, chain B

Ligands and Environments

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE BM14
Spacegroup: P1
Unit cell:
a: 62.75Å b: 93.44Å c: 69.03Å
α: 89.33° β: 102.41° γ: 90.95°
R-values:
R R work R free
0.135 0.132 0.183