› 1zbp

X-ray diffraction
2.4Å resolution

X-Ray Crystal Structure of Protein VPA1032 from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR44

Released:
DOI: 10.2210/pdb1zbp/pdb
PDB entry 1zbp coloured by chain, front view.
PDB entry 1zbp coloured by chain, side view.
PDB entry 1zbp coloured by chain, top view.
Source organism: Vibrio parahaemolyticus RIMD 2210633
Primary publication:
Functional insights from structural genomics.
Forouhar F, Kuzin A, Seetharaman J, Lee I, Zhou W, Abashidze M, Chen Y, Yong W, Janjua H, Fang Y, Wang D, Cunningham K, Xiao R, Acton TB, Pichersky E, Klessig DF, Porter CW, Montelione GT, Tong L
J Struct Funct Genomics 8 37-44 (2007)
PMID: 17588214

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183313 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
hypothetical protein VPA1032 Chain: A
Molecule details ›
Chain: A
Length: 273 amino acids
Theoretical weight: 30.83 KDa
Source organism: Vibrio parahaemolyticus RIMD 2210633
Expression system: Escherichia coli
UniProt:
  • Canonical: Q87HD3 (Residues: 1-265; Coverage: 100%)
Gene name: VPA1032
Sequence domains: ImpE protein
Structure domains: Tetratricopeptide repeat domain

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 5 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X4A
Spacegroup: R3
Unit cell:
a: 97.407Å b: 97.407Å c: 104.994Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.239 0.239 0.292
Expression system: Escherichia coli

Quick links

Citations

9 review citations

Bacterial microcompartments.
Kerfeld et al. (2010)
8 more

3 mentions without citation

TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences.
Karpenahalli et al. (2007)
2 more