› 1zci

X-ray diffraction
1.65Å resolution

HIV-1 DIS RNA subtype F- monoclinic form

Released:
DOI: 10.2210/pdb1zci/pdb
PDB entry 1zci coloured by chain, front view.
PDB entry 1zci coloured by chain, side view.
PDB entry 1zci coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Polymorphism of bulged-out residues in HIV-1 RNA DIS kissing complex and structure comparison with solution studies.
Ennifar E, Dumas P
J Mol Biol 356 771-82 (2006)
PMID: 16403527

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196284 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3' Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 23 nucleotides
Theoretical weight: 7.47 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand K 4 x K
1 modified residue:
Ligand 5BU 4 x 5BU

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-1
Spacegroup: P2
Unit cell:
a: 50.437Å b: 31.762Å c: 87.287Å
α: 90° β: 104.78° γ: 90°
R-values:
R R work R free
0.242 0.242 0.25
Expression system: Not provided

Quick links

Citations

5 review citations

Endogenous polyamine function--the RNA perspective.
Lightfoot et al. (2014)
4 more

7 mentions without citation

RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.
Šponer et al. (2018)
6 more