› 1zf7

X-ray diffraction
1.05Å resolution

GAC Duplex B-DNA

Released:
DOI: 10.2210/pdb1zf7/pdb
PDB entry 1zf7 coloured by chain, front view.
PDB entry 1zf7 coloured by chain, side view.
PDB entry 1zf7 coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
How sequence defines structure: a crystallographic map of DNA structure and conformation.
Hays FA, Teegarden A, Jones ZJ, Harms M, Raup D, Watson J, Cavaliere E, Ho PS
Proc Natl Acad Sci U S A 102 7157-62 (2005)
PMID: 15870206

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-114903 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(*CP*CP*GP*TP*CP*GP*AP*CP*GP*G)-3' Chains: A, B
Molecule details ›
Chains: A, B
Length: 10 nucleotides
Theoretical weight: 3.05 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

2 bound ligands:
Ligand CA 3 x CA
Ligand NA 1 x NA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RUH3R
Spacegroup: R3
Unit cell:
a: 53.44Å b: 53.44Å c: 43.87Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.276 0.276 0.288
Expression system: Not provided

Quick links

Citations

13 review citations

The Halogen Bond.
Cavallo et al. (2016)
12 more

8 mentions without citation

Optimization of the CHARMM additive force field for DNA: Improved treatment of the BI/BII conformational equilibrium.
Hart et al. (2012)
7 more