› 232d

X-ray diffraction
1.3Å resolution

THE HIGH RESOLUTION CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGGCATGCCT)

Released:
DOI: 10.2210/pdb232d/pdb
PDB entry 232d coloured by chain, front view.
PDB entry 232d coloured by chain, side view.
PDB entry 232d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
The high resolution crystal structure of the DNA decamer d(AGGCATGCCT).
Nunn CM, Neidle S
J Mol Biol 256 340-51 (1996)
PMID: 8594201

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-114997 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*AP*GP*GP*CP*AP*TP*GP*CP*CP*T)-3') Chain: A
Molecule details ›
Chain: A
Length: 10 nucleotides
Theoretical weight: 3.05 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand NCO 2 x NCO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE BW7B
Spacegroup: P6122
Unit cell:
a: 32.7Å b: 32.7Å c: 78.7Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.138 not available 0.216
Expression system: Not provided

Quick links

Citations

2 review citations

Structure-based HIV-1 integrase inhibitor design: a future perspective.
Neamati N. (2001)
1 more

3 mentions without citation

Tetrazoles via Multicomponent Reactions.
Neochoritis et al. (2019)
2 more