› 238d

X-ray diffraction
2Å resolution

CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGG(BR)CATGCCT): COMPARISON WITH D(AGGCATGCCT) AND IMPLICATIONS FOR COBALT HEXAMMINE BINDING TO DNA

Released:
DOI: 10.2210/pdb238d/pdb
PDB entry 238d coloured by chain, front view.
PDB entry 238d coloured by chain, side view.
PDB entry 238d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Crystal structure of d(AGGBrCATGCCT): implications for cobalt hexammine binding to DNA.
Nunn CM
J Biomol Struct Dyn 14 49-55 (1996)
PMID: 8877561

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-115003 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*AP*GP*GP*(CBR)P*AP*TP*GP*CP*CP*T)-3') Chain: A
Molecule details ›
Chain: A
Length: 10 nucleotides
Theoretical weight: 3.12 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
1 modified residue:
Ligand CBR 1 x CBR

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE BW7B
Spacegroup: P6122
Unit cell:
a: 33.2Å b: 33.2Å c: 77.1Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.196 0.196 not available
Expression system: Not provided

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Citations

4 citation in other articles

Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine.
Kieft et al. (1997)
3 more