› 247d

X-ray diffraction
2.8Å resolution

CRYSTAL STRUCTURES OF AN A-FORM DUPLEX WITH SINGLE-ADENOSINE BULGES AND A CONFORMATIONAL BASIS FOR SITE SPECIFIC RNA SELF-CLEAVAGE

Released:
DOI: 10.2210/pdb247d/pdb
PDB entry 247d coloured by chain, front view.
PDB entry 247d coloured by chain, side view.
PDB entry 247d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage.
Portmann S, Grimm S, Workman C, Usman N, Egli M
Chem Biol 3 173-84 (1996)
PMID: 8807843

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113096 (preferred)
Entry contents:
1 distinct DNA/RNA hybrid molecule
Macromolecule:
DNA/RNA (5'-R(*GP*CP*GP*)-D(*AP*TP*AP*TP*AP*)-R(*CP*GP*C)-3') Chain: A
Molecule details ›
Chain: A
Length: 11 nucleotides
Theoretical weight: 3.45 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: P6522
Unit cell:
a: 27.245Å b: 27.245Å c: 177.399Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.187 0.187 not available
Expression system: Not provided

Quick links

Citations

5 review citations

Stitching together RNA tertiary architectures.
Hermann et al. (1999)
4 more

1 mention without citation

Detection and analysis of variants of JC polyomavirus in urine samples from HIV-1-infected patients in China's Zhejiang Province.
Hu et al. (2018)