› 2aiz

Solution NMR

Solution structure of peptidoglycan associated lipoprotein from Haemophilus influenza bound to UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

Released:
DOI: 10.2210/pdb2aiz/pdb
PDB entry 2aiz coloured by chain, ensemble of 20 models, front view.
PDB entry 2aiz coloured by chain, ensemble of 20 models, side view.
PDB entry 2aiz coloured by chain, ensemble of 20 models, top view.
Source organisms:
Primary publication:
Peptidoglycan recognition by Pal, an outer membrane lipoprotein.
Parsons LM, Lin F, Orban J
Biochemistry 45 2122-8 (2006)
PMID: 16475801

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-145279 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Peptidoglycan-associated lipoprotein Chain: P
Molecule details ›
Chain: P
Length: 134 amino acids
Theoretical weight: 14.25 KDa
Source organism: Haemophilus influenzae
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P10324 (Residues: 20-153; Coverage: 100%)
Gene names: HI_0381, ompP6, pal
Sequence domains: OmpA family
Structure domains: OmpA-like domain
L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine Chain: U
Molecule details ›
Chain: U
Length: 5 amino acids
Theoretical weight: 534 Da
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

2 bound ligands:
Ligand AMU 1 x AMU
Ligand UDP 1 x UDP
3 modified residues:
Ligand DGL 1 x DGL
Ligand 6CL 1 x 6CL
Ligand DAL 2 x DAL

Experiments and Validation Details

Entry percentile scores
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided

Quick links

Citations

12 review citations

Lipoproteins of bacterial pathogens.
Kovacs-Simon et al. (2011)
11 more

16 mentions without citation

Colicin biology.
Cascales et al. (2007)
15 more