› 2ap0

Solution NMR

Solution Structure of the C27A ScYLV P1-P2 Frameshifting Pseudoknot, 20 Lowest Energy Structures

Released:
DOI: 10.2210/pdb2ap0/pdb
PDB entry 2ap0 coloured by chain, ensemble of 20 models, front view.
PDB entry 2ap0 coloured by chain, ensemble of 20 models, side view.
PDB entry 2ap0 coloured by chain, ensemble of 20 models, top view.
Source organism: Synthetic construct
Primary publication:
The global structures of a wild-type and poorly functional plant luteoviral mRNA pseudoknot are essentially identical.
Cornish PV, Stammler SN, Giedroc DP
RNA 12 1959-69 (2006)
PMID: 17000902

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196310 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
C27A Sugarcane Yellow Leaf Virus RNA pseudoknot Chain: A
Molecule details ›
Chain: A
Length: 28 nucleotides
Theoretical weight: 9.02 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
1 modified residue:
Ligand CH 1 x CH

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing starting with random coordinates followed by refinement with residual dipolar couplings
Expression system: Not provided

Quick links

Citations

4 review citations

Frameshifting RNA pseudoknots: structure and mechanism.
Giedroc et al. (2009)
3 more

5 mentions without citation

SARSA: a web tool for structural alignment of RNA using a structural alphabet.
Chang et al. (2008)
4 more