› 2d0w

X-ray diffraction
1.98Å resolution

Crystal structure of cytochrome cL from Hyphomicrobium denitrificans

Released:
DOI: 10.2210/pdb2d0w/pdb
PDB entry 2d0w coloured by chain, front view.
PDB entry 2d0w coloured by chain, side view.
PDB entry 2d0w coloured by chain, top view.
Source organism: Hyphomicrobium denitrificans
Primary publication:
Crystal structures of cytochrome c(L) and methanol dehydrogenase from Hyphomicrobium denitrificans: structural and mechanistic insights into interactions between the two proteins.
Nojiri M, Hira D, Yamaguchi K, Okajima T, Tanizawa K, Suzuki S
Biochemistry 45 3481-92 (2006)
PMID: 16533029

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-175443 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c-L Chains: A, B
Molecule details ›
Chains: A, B
Length: 170 amino acids
Theoretical weight: 18.58 KDa
Source organism: Hyphomicrobium denitrificans
UniProt:
  • Canonical: Q4AE24 (Residues: 24-193; Coverage: 100%)
Gene name: moxG
Sequence domains: Cytochrome C oxidase, cbb3-type, subunit III
Structure domains: Cytochrome c-like domain

Ligands and Environments

2 bound ligands:
Ligand ZN 10 x ZN
Ligand HEM 2 x HEM
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44B2
Spacegroup: P21
Unit cell:
a: 45.779Å b: 57.283Å c: 67.007Å
α: 90° β: 101.55° γ: 90°
R-values:
R R work R free
0.185 0.185 0.191

Quick links

Citations

4 review citations

PQQ-dependent methanol dehydrogenases: rare-earth elements make a difference.
Keltjens et al. (2014)
3 more

3 mentions without citation

The identification of an integral membrane, cytochrome c urate oxidase completes the catalytic repertoire of a therapeutic enzyme.
Doniselli et al. (2015)
2 more