› 2d2i

X-ray diffraction
2.5Å resolution

Crystal Structure of NADP-Dependent Glyceraldehyde-3-Phosphate Dehydrogenase from Synechococcus Sp. complexed with Nadp+

Released:
DOI: 10.2210/pdb2d2i/pdb
PDB entry 2d2i coloured by chain, front view.
PDB entry 2d2i coloured by chain, side view.
PDB entry 2d2i coloured by chain, top view.
Source organism: Synechococcus sp.
Primary publication:
Structure of NADP-dependent glyceraldehyde-3-phosphate dehydrogenase from Synechococcus PCC7942 complexed with NADP.
Kitatani T, Nakamura Y, Wada K, Kinoshita T, Tamoi M, Shigeoka S, Tada T
Acta Crystallogr Sect F Struct Biol Cryst Commun 62 315-9 (2006)
PMID: 16582475

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-176271 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glyceraldehyde-3-phosphate dehydrogenase Chains: A, B, O, P, Q, R
Molecule details ›
Chains: A, B, O, P, Q, R
Length: 380 amino acids
Theoretical weight: 41.38 KDa
Source organism: Synechococcus sp.
Expression system: Escherichia coli
UniProt:
  • Canonical: Q55245 (Residues: 1-380; Coverage: 100%)
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand SO4 12 x SO4
Ligand NAP 6 x NAP
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-6A
Spacegroup: C2
Unit cell:
a: 150.006Å b: 79.588Å c: 206.155Å
α: 90° β: 101.31° γ: 90°
R-values:
R R work R free
0.191 0.191 0.24
Expression system: Escherichia coli

Quick links

Citations

4 citation in other articles

Structure basis for the regulation of glyceraldehyde-3-phosphate dehydrogenase activity via the intrinsically disordered protein CP12.
Matsumura et al. (2011)
3 more

4 mentions without citation

Proteome-wide light/dark modulation of thiol oxidation in cyanobacteria revealed by quantitative site-specific redox proteomics.
Guo et al. (2014)
3 more