› 2d9r

X-ray diffraction
2.01Å resolution

Structure of Conserved Protein of Unknown Function PG0164 from Porphyromonas gingivalis [W83]

Released:
DOI: 10.2210/pdb2d9r/pdb
PDB entry 2d9r coloured by chain, front view.
PDB entry 2d9r coloured by chain, side view.
PDB entry 2d9r coloured by chain, top view.
Source organism: Porphyromonas gingivalis W83
Entry authors: Binkowski TA, Hatzos C, Moy S, Collart F, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-181782 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DUF1905 domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 104 amino acids
Theoretical weight: 11.61 KDa
Source organism: Porphyromonas gingivalis W83
Expression system: Escherichia coli
UniProt:
  • Canonical: Q7MXL1 (Residues: 1-104; Coverage: 100%)
Gene name: PG_0164
Sequence domains: Domain of unknown function (DUF1905)
Structure domains: AF2212/PG0164-like

Ligands and Environments

2 bound ligands:
Ligand CL 2 x CL
Ligand BME 1 x BME
1 modified residue:
Ligand MSE 3 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM
Spacegroup: P3121
Unit cell:
a: 50.631Å b: 50.631Å c: 68.651Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.18 0.178 0.227
Expression system: Escherichia coli

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