› 2dde

Solution NMR

Structure of cinnamycin complexed with lysophosphatidylethanolamine

Released:
DOI: 10.2210/pdb2dde/pdb
PDB entry 2dde coloured by chain, ensemble of 10 models, front view.
PDB entry 2dde coloured by chain, ensemble of 10 models, side view.
PDB entry 2dde coloured by chain, ensemble of 10 models, top view.
Source organism: Streptomyces griseoverticillatus
Primary publication:
Structure determination of an immunopotentiator peptide, cinnamycin, complexed with lysophosphatidylethanolamine by 1H-NMR1.
Hosoda K, Ohya M, Kohno T, Maeda T, Endo S, Wakamatsu K
J Biochem 119 226-30 (1996)
PMID: 8882709

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-151577 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lantibiotic cinnamycin Chain: A
Molecule details ›
Chain: A
Length: 19 amino acids
Theoretical weight: 2.07 KDa
Source organism: Streptomyces griseoverticillatus
UniProt:
  • Canonical: P29827 (Residues: 60-78; Coverage: 24%)
Gene names: cinA, rocA

Ligands and Environments

1 bound ligand:
Ligand LSP 1 x LSP
2 modified residues:
Ligand DAL 1 x DAL
Ligand BH2 1 x BH2

Experiments and Validation Details

Entry percentile scores
Refinement method: DISTANCE GEOMETRY, SIMULATED ANNEALING

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Citations

16 review citations

Bacteriocins: developing innate immunity for food.
Cotter et al. (2005)
15 more

8 mentions without citation

Mechanism of Action of Ribosomally Synthesized and Post-Translationally Modified Peptides.
Ongpipattanakul et al. (2022)
7 more