› 2dnr

Solution NMR

Solution structure of RNA binding domain in Synaptojanin 1

Released:
DOI: 10.2210/pdb2dnr/pdb
PDB entry 2dnr coloured by chain, ensemble of 20 models, front view.
PDB entry 2dnr coloured by chain, ensemble of 20 models, side view.
PDB entry 2dnr coloured by chain, ensemble of 20 models, top view.
Source organism: Homo sapiens
Entry authors: Tsuda K, Muto Y, Inoue M, Kigawa T, Terada T, Shirouzu M, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Reaction catalysed: 
1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 4-phosphate + phosphate
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-128923 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Synaptojanin-1 Chain: A
Molecule details ›
Chain: A
Length: 91 amino acids
Theoretical weight: 9.66 KDa
Source organism: Homo sapiens
Expression system: Cell free synthesis
UniProt:
  • Canonical: O43426 (Residues: 894-971; Coverage: 5%)
Gene names: KIAA0910, SYNJ1
Sequence domains: Domain of unknown function (DUF1866)
Structure domains: Alpha-Beta Plaits

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: torsion angle dynamics, restrainted molecular dynamics
Expression system: Cell free synthesis

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