› 2dsj

X-ray diffraction
1.8Å resolution

Crystal structure of project ID TT0128 from Thermus thermophilus HB8

Released:
DOI: 10.2210/pdb2dsj/pdb
PDB entry 2dsj coloured by chain, front view.
PDB entry 2dsj coloured by chain, side view.
PDB entry 2dsj coloured by chain, top view.
Source organism: Thermus thermophilus HB8
Entry authors: Shimizu K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Reaction catalysed: 
2'-deoxyuridine + phosphate = uracil + 2-deoxy-alpha-D-ribose 1-phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-177871 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Pyrimidine nucleoside phosphorylase C-terminal domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 423 amino acids
Theoretical weight: 45.44 KDa
Source organism: Thermus thermophilus HB8
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q5SHF9 (Residues: 1-423; Coverage: 100%)
Gene name: TTHA1771
Sequence domains:
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand CL 2 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL26B1
Spacegroup: P21
Unit cell:
a: 58.828Å b: 76.234Å c: 103.862Å
α: 90° β: 91.26° γ: 90°
R-values:
R R work R free
0.198 0.198 0.222
Expression system: Escherichia coli BL21(DE3)

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