› 2duk

X-ray diffraction
2.62Å resolution

Crystal structure of MS0616

Released:
DOI: 10.2210/pdb2duk/pdb
PDB entry 2duk coloured by chain, front view.
PDB entry 2duk coloured by chain, side view.
PDB entry 2duk coloured by chain, top view.
Source organism: Mus musculus
Entry authors: Hosaka T, Nishino A, Uchikubo K-T, Kishishita S, Murayama K, Shirouzu M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Reaction catalysed: 
Diphospho-myo-inositol polyphosphate + H(2)O = myo-inositol polyphosphate + phosphate
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-185880 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Diphosphoinositol polyphosphate phosphohydrolase 2 Chains: A, B
Molecule details ›
Chains: A, B
Length: 138 amino acids
Theoretical weight: 15.97 KDa
Source organism: Mus musculus
Expression system: Not provided
UniProt:
  • Canonical: Q8R2U6 (Residues: 8-145; Coverage: 77%)
Gene names: Dipp2, Nudt4
Sequence domains: NUDIX domain
Structure domains: Nucleoside Triphosphate Pyrophosphohydrolase

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL26B2
Spacegroup: P212121
Unit cell:
a: 40.891Å b: 41.448Å c: 189.288Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.249 0.247 0.287
Expression system: Not provided

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