› 2dvx

X-ray diffraction
1.7Å resolution

Crystal Structure of 2,6-Dihydroxybenzoate Decarboxylase Complexed with inhibitor 2,3-dihydroxybenzaldehyde

Released:
DOI: 10.2210/pdb2dvx/pdb
PDB entry 2dvx coloured by chain, front view.
PDB entry 2dvx coloured by chain, side view.
PDB entry 2dvx coloured by chain, top view.
Source organism: Rhizobium sp. MTP-10005
Entry author: Goto M

Function and Biology Details

Reaction catalysed: 
2,6-dihydroxybenzoate = 1,3-dihydroxybenzene + CO(2)
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-178844 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Gamma-resorcylate decarboxylase Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 327 amino acids
Theoretical weight: 37.47 KDa
Source organism: Rhizobium sp. MTP-10005
UniProt:
  • Canonical: Q60GU1 (Residues: 1-327; Coverage: 100%)
Gene name: graF
Sequence domains: Amidohydrolase
Structure domains: Metal-dependent hydrolases

Ligands and Environments

2 bound ligands:
Ligand ZN 4 x ZN
Ligand 23A 4 x 23A
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: P212121
Unit cell:
a: 109.02Å b: 113.548Å c: 119.322Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.184 0.184 0.208

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