› 2dx8

X-ray diffraction
2.7Å resolution

Crystal Structure Analysis of the PHD domain of the Transcription Coactivator Pygophus

Released:
DOI: 10.2210/pdb2dx8/pdb
PDB entry 2dx8 coloured by chain, front view.
PDB entry 2dx8 coloured by chain, side view.
PDB entry 2dx8 coloured by chain, top view.
Source organism: Mus musculus
Entry authors: Padmanabhan B, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-190037 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Pygopus homolog 1 Chains: A, B
Molecule details ›
Chains: A, B
Length: 67 amino acids
Theoretical weight: 7.24 KDa
Source organism: Mus musculus
Expression system: Not provided
UniProt:
  • Canonical: Q9D0P5 (Residues: 330-396; Coverage: 16%)
Gene name: Pygo1
Sequence domains: PHD-finger
Structure domains: Zinc/RING finger domain, C3HC4 (zinc finger)

Ligands and Environments

1 bound ligand:
Ligand ZN 4 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL26B2
Spacegroup: P43212
Unit cell:
a: 60.079Å b: 60.079Å c: 95.242Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.199 0.196 0.255
Expression system: Not provided

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