› 2e0z

X-ray diffraction
3.6Å resolution

Crystal structure of virus-like particle from Pyrococcus furiosus

Released:
DOI: 10.2210/pdb2e0z/pdb
PDB entry 2e0z coloured by chain, front view.
PDB entry 2e0z coloured by chain, side view.
PDB entry 2e0z coloured by chain, top view.
Source organism: Pyrococcus furiosus
Primary publication:
The crystal structure of a virus-like particle from the hyperthermophilic archaeon Pyrococcus furiosus provides insight into the evolution of viruses.
Akita F, Chong KT, Tanaka H, Yamashita E, Miyazaki N, Nakaishi Y, Suzuki M, Namba K, Ono Y, Tsukihara T, Nakagawa A
J Mol Biol 368 1469-83 (2007)
PMID: 17397865

Function and Biology Details

Reaction catalysed: 
4 Fe(2+) + 4 H(+) + O(2) = 4 Fe(3+) + 2 H(2)O
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-186407 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ferritin-like-encapsulin shell fusion protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 345 amino acids
Theoretical weight: 38.85 KDa
Source organism: Pyrococcus furiosus
UniProt:
  • Canonical: Q8U1L4 (Residues: 1-345; Coverage: 100%)
Gene names: PF1192/PF1191, enc
Sequence domains:
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44XU
Spacegroup: P41212
Unit cell:
a: 631.5Å b: 631.5Å c: 351.3Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.268 0.268 0.267

Quick links

Citations

17 review citations

Structure unifies the viral universe.
Abrescia et al. (2012)
16 more

13 mentions without citation

Encapsulins-Bacterial Protein Nanocompartments: Structure, Properties, and Application.
Gabashvili et al. (2020)
12 more