› 2e3u

X-ray diffraction
2.3Å resolution

Crystal structure analysis of Dim2p from Pyrococcus horikoshii OT3

Released:
DOI: 10.2210/pdb2e3u/pdb
PDB entry 2e3u coloured by chain, front view.
PDB entry 2e3u coloured by chain, side view.
PDB entry 2e3u coloured by chain, top view.
Source organism: Pyrococcus horikoshii OT3
Primary publication:
Crystal structure of Dim2p: a preribosomal RNA processing factor, from Pyrococcus horikoshii OT3 at 2.30 A.
Jia MZ, Ohtsuka J, Lee WC, Nagata K, Tanokura M
Proteins 69 428-32 (2007)
PMID: 17654551

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-129844 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
K Homology domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 219 amino acids
Theoretical weight: 25.19 KDa
Source organism: Pyrococcus horikoshii OT3
Expression system: Escherichia coli
UniProt:
  • Canonical: O59282 (Residues: 1-219; Coverage: 100%)
Gene name: PH1566
Sequence domains: KH domain
Structure domains: K Homology domain, type 1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: P212121
Unit cell:
a: 45.949Å b: 47.45Å c: 95.722Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.229 0.228 0.263
Expression system: Escherichia coli

Quick links

Citations

2 citation in other articles

TOR regulates the subcellular distribution of DIM2, a KH domain protein required for cotranscriptional ribosome assembly and pre-40S ribosome export.
Vanrobays et al. (2008)
1 more

1 mention without citation

Domain definition and interaction mapping for the endonuclease complex hNob1/hPno1.
Raoelijaona et al. (2018)