› 2e67

X-ray diffraction
2.9Å resolution

Crystal structure of the hypothetical protein TTHB029 from Thermus thermophilus HB8

Released:
DOI: 10.2210/pdb2e67/pdb
PDB entry 2e67 coloured by chain, front view.
PDB entry 2e67 coloured by chain, side view.
PDB entry 2e67 coloured by chain, top view.
Source organism: Thermus thermophilus HB8
Primary publication:
Crystal structure of the YdjC-family protein TTHB029 from Thermus thermophilus HB8: structural relationship with peptidoglycan N-acetylglucosamine deacetylase.
Imagawa T, Iino H, Kanagawa M, Ebihara A, Kuramitsu S, Tsuge H
Biochem Biophys Res Commun 367 535-41 (2008)
PMID: 18177738

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-176174 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Carbohydrate deacetylase Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 264 amino acids
Theoretical weight: 29.63 KDa
Source organism: Thermus thermophilus HB8
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q53WD3 (Residues: 1-264; Coverage: 100%)
Gene name: TTHB029
Sequence domains: YdjC-like protein
Structure domains: Glycoside hydrolase/deacetylase

Ligands and Environments

1 bound ligand:
Ligand MG 6 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL26B2
Spacegroup: R32
Unit cell:
a: 202.006Å b: 202.006Å c: 345.294Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.221 0.219 0.259
Expression system: Escherichia coli BL21

Quick links

Citations

7 citation in other articles

Transcription profile of Thermus thermophilus CRISPR systems after phage infection.
Agari et al. (2010)
6 more

2 mentions without citation

Crystallization screening test for the whole-cell project on Thermus thermophilus HB8.
Iino et al. (2008)
1 more