› 2gc9

X-ray diffraction
1.7Å resolution

Crystal structure of p-coumaric acid decarboxylase (NP_786857.1) from Lactobacillus plantarum at 1.70 A resolution

Released:
DOI: 10.2210/pdb2gc9/pdb
PDB entry 2gc9 coloured by chain, front view.
PDB entry 2gc9 coloured by chain, side view.
PDB entry 2gc9 coloured by chain, top view.
Source organism: Lactiplantibacillus plantarum WCFS1
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-123767 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Phenolic acid decarboxylase Chains: A, B
Molecule details ›
Chains: A, B
Length: 179 amino acids
Theoretical weight: 21.42 KDa
Source organism: Lactiplantibacillus plantarum WCFS1
Expression system: Escherichia coli
UniProt:
  • Canonical: F9ULL2 (Residues: 1-178; Coverage: 100%)
Gene names: lp_3665, padA
Sequence domains: Phenolic acid decarboxylase (PAD)
Structure domains: Lipocalin

Ligands and Environments

3 bound ligands:
Ligand SO4 4 x SO4
Ligand CIT 1 x CIT
Ligand EDO 30 x EDO
1 modified residue:
Ligand MSE 14 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P32
Unit cell:
a: 64.17Å b: 64.17Å c: 83.12Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.177 0.175 0.212
Expression system: Escherichia coli

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