› 2gjb

X-ray diffraction
2.2Å resolution

Crosslinking of DNA duplexes: X-ray crystal structure of an unsubstituted bisacridine with the oligonucleotide d(CGTACG)

Released:
DOI: 10.2210/pdb2gjb/pdb
PDB entry 2gjb coloured by chain, front view.
PDB entry 2gjb coloured by chain, side view.
PDB entry 2gjb coloured by chain, top view.
Source organism: Synthetic construct
Entry authors: Gan Y, Cardin CJ, Denny WA

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-115301 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(*CP*GP*TP*AP*CP*GP*)-3' Chain: A
Molecule details ›
Chain: A
Length: 6 nucleotides
Theoretical weight: 1.81 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

2 bound ligands:
Ligand K 1 x K
Ligand BMO 1 x BMO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE X12
Spacegroup: P6522
Unit cell:
a: 25.75Å b: 25.75Å c: 78.994Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.358 0.27 0.305
Expression system: Not provided

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