› 2gu1

X-ray diffraction
1.9Å resolution

Crystal structure of a zinc containing peptidase from vibrio cholerae

Released:
DOI: 10.2210/pdb2gu1/pdb
PDB entry 2gu1 coloured by chain, front view.
PDB entry 2gu1 coloured by chain, side view.
PDB entry 2gu1 coloured by chain, top view.
Source organism: Vibrio cholerae
Primary publication:
Crystal structure of a putative lysostaphin peptidase from Vibrio cholerae.
Ragumani S, Kumaran D, Burley SK, Swaminathan S
Proteins 72 1096-103 (2008)
PMID: 18498110

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-192118 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Zinc peptidase Chain: A
Molecule details ›
Chain: A
Length: 361 amino acids
Theoretical weight: 40.68 KDa
Source organism: Vibrio cholerae
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9KUL5 (Residues: 63-412; Coverage: 86%)
Gene name: VC_0503
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand ZN 1 x ZN
Ligand NA 1 x NA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X12C, NSLS BEAMLINE X29A
Spacegroup: P21
Unit cell:
a: 49.382Å b: 85.396Å c: 53.404Å
α: 90° β: 112.96° γ: 90°
R-values:
R R work R free
0.23 0.23 0.264
Expression system: Escherichia coli

Quick links

Citations

6 citation in other articles

Peptidoglycan crosslinking relaxation promotes Helicobacter pylori's helical shape and stomach colonization.
Sycuro et al. (2010)
5 more

8 mentions without citation

One fold, many functions-M23 family of peptidoglycan hydrolases.
Razew et al. (2022)
7 more