› 2gvd

X-ray diffraction
2.9Å resolution

Complex Of Gs- With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With TNP-ATP and Mn

Released:
DOI: 10.2210/pdb2gvd/pdb
PDB entry 2gvd coloured by chain, front view.
PDB entry 2gvd coloured by chain, side view.
PDB entry 2gvd coloured by chain, top view.
Source organisms:
Primary publication:
Broad specificity of mammalian adenylyl cyclase for interaction with 2',3'-substituted purine- and pyrimidine nucleotide inhibitors.
Mou TC, Gille A, Suryanarayana S, Richter M, Seifert R, Sprang SR
Mol Pharmacol 70 878-86 (2006)
PMID: 16766715

Function and Biology Details

Reaction catalysed: 
ATP = 3',5'-cyclic AMP + diphosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domains:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-138237 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Adenylate cyclase type 5 Chain: A
Molecule details ›
Chain: A
Length: 225 amino acids
Theoretical weight: 25.53 KDa
Source organism: Canis lupus familiaris
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: P30803 (Residues: 434-434, 444-661; Coverage: 17%)
Gene name: ADCY5
Sequence domains: Adenylate and Guanylate cyclase catalytic domain
Structure domains: Nucleotide cyclase
Adenylate cyclase type 2 Chain: B
Molecule details ›
Chain: B
Length: 212 amino acids
Theoretical weight: 23.72 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: P26769 (Residues: 870-1081; Coverage: 19%)
Gene name: Adcy2
Sequence domains: Adenylate and Guanylate cyclase catalytic domain
Structure domains: Nucleotide cyclase
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short Chain: C
Molecule details ›
Chain: C
Length: 394 amino acids
Theoretical weight: 45.77 KDa
Source organism: Bos taurus
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: P04896 (Residues: 1-394; Coverage: 100%)
Gene names: GNAS, GNAS1
Sequence domains: G-protein alpha subunit
Structure domains:

Ligands and Environments

5 bound ligands:
Ligand MN 3 x MN
Ligand FKP 1 x FKP
Ligand 128 1 x 128
Ligand CL 1 x CL
Ligand GSP 1 x GSP
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.1
Spacegroup: P21212
Unit cell:
a: 118.2Å b: 133.4Å c: 70.6Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.245 0.245 0.279
Expression system: Escherichia coli BL21

Quick links

Citations

7 review citations

Capturing adenylyl cyclases as potential drug targets.
Pierre et al. (2009)
6 more

6 mentions without citation

International Union of Basic and Clinical Pharmacology. CI. Structures and Small Molecule Modulators of Mammalian Adenylyl Cyclases.
Dessauer et al. (2017)
5 more