› 2hdo

X-ray diffraction
1.5Å resolution

Crystal structure of putative phosphoglycolate phosphatase (np_784602.1) from Lactobacillus plantarum at 1.50 A resolution

Released:
DOI: 10.2210/pdb2hdo/pdb
PDB entry 2hdo coloured by chain, front view.
PDB entry 2hdo coloured by chain, side view.
PDB entry 2hdo coloured by chain, top view.
Source organism: Lactiplantibacillus plantarum
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Reactions catalysed: 
2-phosphoglycolate + H(2)O = glycolate + phosphate
Diphosphate + H(2)O = 2 phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-123774 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Phosphohydrolase Chain: A
Molecule details ›
Chain: A
Length: 209 amino acids
Theoretical weight: 23.84 KDa
Source organism: Lactiplantibacillus plantarum
Expression system: Escherichia coli
UniProt:
  • Canonical: F9UM81 (Residues: 1-208; Coverage: 100%)
Gene names: gph1, lp_0872
Sequence domains: Haloacid dehalogenase-like hydrolase
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand PO4 2 x PO4
1 modified residue:
Ligand MSE 11 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P61
Unit cell:
a: 86.89Å b: 86.89Å c: 47.19Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.178 0.176 0.209
Expression system: Escherichia coli

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