› 2hlh

X-ray diffraction
1.95Å resolution

Crystal structure of fucosyltransferase NodZ from Bradyrhizobium

Released:
DOI: 10.2210/pdb2hlh/pdb
PDB entry 2hlh coloured by chain, front view.
PDB entry 2hlh coloured by chain, side view.
PDB entry 2hlh coloured by chain, top view.
Source organism: Bradyrhizobium sp. WM9
Primary publication:
High-resolution structure of NodZ fucosyltransferase involved in the biosynthesis of the nodulation factor.
Brzezinski K, Stepkowski T, Panjikar S, Bujacz G, Jaskolski M
Acta Biochim Pol 54 537-49 (2007)
PMID: 17762900

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189595 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
GT23 domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 330 amino acids
Theoretical weight: 37.83 KDa
Source organism: Bradyrhizobium sp. WM9
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9AQ17 (Residues: 1-324; Coverage: 100%)
Gene name: nodZ
Sequence domains: Nodulation protein Z (NodZ)
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand PO4 4 x PO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE BW7A
Spacegroup: P6522
Unit cell:
a: 130.1Å b: 130.1Å c: 83.3Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.162 0.161 0.206
Expression system: Escherichia coli

Quick links

Citations

4 review citations

Development of fucosyltransferase and fucosidase inhibitors.
Tu et al. (2013)
3 more

3 mentions without citation

Identification of putative rhamnogalacturonan-II specific glycosyltransferases in Arabidopsis using a combination of bioinformatics approaches.
Voxeur et al. (2012)
2 more