› 2hpz

X-ray diffraction
1.69Å resolution

Crystal structure of proteinase K complex with a synthetic peptide KLKLLVVIRLK at 1.69 A resolution

Released:
DOI: 10.2210/pdb2hpz/pdb
PDB entry 2hpz coloured by chain, front view.
PDB entry 2hpz coloured by chain, side view.
PDB entry 2hpz coloured by chain, top view.
Source organism: Parengyodontium album
Entry authors: Prem kumar R, Singh AK, Somvanshi RK, Singh N, Sharma S, Kaur P, Dey S, Bhushan A, Singh TP

Function and Biology Details

Reaction catalysed: 
Hydrolysis of keratin, and of other proteins with subtilisin-like specificity. Hydrolyzes peptide amides.
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-139284 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Proteinase K Chain: A
Molecule details ›
Chain: A
Length: 279 amino acids
Theoretical weight: 28.96 KDa
Source organism: Parengyodontium album
UniProt:
  • Canonical: P06873 (Residues: 106-384; Coverage: 76%)
Gene name: PROK
Sequence domains: Subtilase family
Structure domains: Peptidase S8/S53 domain
11-mer synthetic peptide Chain: B
Molecule details ›
Chain: B
Length: 11 amino acids
Theoretical weight: 1.33 KDa
Source organism: Parengyodontium album
Expression system: Not provided

Ligands and Environments

2 bound ligands:
Ligand CA 1 x CA
Ligand NO3 2 x NO3
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU300
Spacegroup: P43212
Unit cell:
a: 68.312Å b: 68.312Å c: 108.381Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.16 0.159 0.179
Expression system: Not provided

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