› 2i5u

X-ray diffraction
1.5Å resolution

Crystal structure of DnaD domain protein from Enterococcus faecalis. Structural genomics target APC85179

Released:
DOI: 10.2210/pdb2i5u/pdb
PDB entry 2i5u coloured by chain, front view.
PDB entry 2i5u coloured by chain, side view.
PDB entry 2i5u coloured by chain, top view.
Source organism: Enterococcus faecalis V583
Entry authors: Wu R, Zhang R, Bargassa M, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-182752 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DnaD domain protein Chain: A
Molecule details ›
Chain: A
Length: 83 amino acids
Theoretical weight: 9.68 KDa
Source organism: Enterococcus faecalis V583
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q830E8 (Residues: 158-237; Coverage: 31%)
Gene name: EF_2839
Sequence domains: Replication initiation and membrane attachment
Structure domains: DnaD domain-like

Ligands and Environments

1 bound ligand:
Ligand MG 1 x MG
1 modified residue:
Ligand MSE 2 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P43
Unit cell:
a: 48.795Å b: 48.795Å c: 32.795Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.182 0.18 0.227
Expression system: Escherichia coli BL21

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