› 2ism

X-ray diffraction
1.9Å resolution

Crystal structure of the putative oxidoreductase (glucose dehydrogenase) (TTHA0570) from thermus theromophilus HB8

Released:
DOI: 10.2210/pdb2ism/pdb
PDB entry 2ism coloured by chain, front view.
PDB entry 2ism coloured by chain, side view.
PDB entry 2ism coloured by chain, top view.
Source organism: Thermus thermophilus HB8
Entry authors: Jeyakanthan J, Kanaujia SP, Vasuki Ranjani C, Sekar K, Ebihara A, Shinkai A, Nakagawa N, Shimizu N, Yamamoto M, Kuramitsu S, Shiro Y, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-178106 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glucose/Sorbosone dehydrogenase domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 352 amino acids
Theoretical weight: 38.88 KDa
Source organism: Thermus thermophilus HB8
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q5SKS3 (Residues: 1-352; Coverage: 100%)
Gene name: TTHA0570
Sequence domains: Glucose / Sorbosone dehydrogenase
Structure domains: TolB, C-terminal domain

Ligands and Environments

2 bound ligands:
Ligand CA 2 x CA
Ligand CL 2 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: P21
Unit cell:
a: 36.898Å b: 132.964Å c: 60.78Å
α: 90° β: 97.18° γ: 90°
R-values:
R R work R free
0.181 0.181 0.208
Expression system: Escherichia coli BL21(DE3)

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