› 2j68

X-ray diffraction
3.1Å resolution

Bacterial dynamin-like protein BDLP, GDP bound

Released:
DOI: 10.2210/pdb2j68/pdb
PDB entry 2j68 coloured by chain, front view.
PDB entry 2j68 coloured by chain, side view.
PDB entry 2j68 coloured by chain, top view.
Source organism: Nostoc punctiforme
Primary publication:
A bacterial dynamin-like protein.
Low HH, Löwe J
Nature 444 766-9 (2006)
PMID: 17122778

Function and Biology Details

Reaction catalysed: 
GTP + H(2)O = GDP + phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-109617 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Bacterial dynamin-like protein Chain: A
Molecule details ›
Chain: A
Length: 695 amino acids
Theoretical weight: 78.72 KDa
Source organism: Nostoc punctiforme
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: B2IZD3 (Residues: 1-693; Coverage: 100%)
Gene name: Npun_R6513
Sequence domains:

Ligands and Environments

1 bound ligand:
Ligand GDP 1 x GDP
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-4
Spacegroup: I222
Unit cell:
a: 77.586Å b: 154.95Å c: 247.853Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.223 0.223 0.269
Expression system: Escherichia coli BL21

Quick links

Citations

52 review citations

Dynamin, a membrane-remodelling GTPase.
Ferguson et al. (2012)
51 more

16 mentions without citation

Mitochondrial fragmentation in neurodegeneration.
Knott et al. (2008)
15 more