› 2ja9

X-ray diffraction
2.2Å resolution

Structure of the N-terminal deletion of yeast exosome component Rrp40

Released:
DOI: 10.2210/pdb2ja9/pdb
PDB entry 2ja9 coloured by chain, front view.
PDB entry 2ja9 coloured by chain, side view.
PDB entry 2ja9 coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Structural and biochemical characterization of the yeast exosome component Rrp40.
Oddone A, Lorentzen E, Basquin J, Gasch A, Rybin V, Conti E, Sattler M
EMBO Rep 8 63-9 (2007)
PMID: 17159918

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-170626 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Exosome complex component RRP40 Chain: A
Molecule details ›
Chain: A
Length: 175 amino acids
Theoretical weight: 19.61 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q08285 (Residues: 62-236; Coverage: 73%)
Gene names: RRP40, YOL142W
Sequence domains:
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: I4132
Unit cell:
a: 153.51Å b: 153.51Å c: 153.51Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.19 0.189 0.206
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

11 review citations

The exosome and RNA quality control in the nucleus.
Vanacova et al. (2007)
10 more

3 mentions without citation

Structural and biochemical characterization of the yeast exosome component Rrp40.
Oddone et al. (2007)
2 more