› 2jd9

X-ray diffraction
1.8Å resolution

Structure of a pectin binding carbohydrate binding module determined in an orthorhombic crystal form.

Released:
DOI: 10.2210/pdb2jd9/pdb
PDB entry 2jd9 coloured by chain, front view.
PDB entry 2jd9 coloured by chain, side view.
PDB entry 2jd9 coloured by chain, top view.
Source organism: Yersinia enterocolitica
Primary publication:
Identification and characterization of a novel periplasmic polygalacturonic acid binding protein from Yersinia enterolitica.
Abbott DW, Hrynuik S, Boraston AB
J Mol Biol 367 1023-33 (2007)
PMID: 17292916

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-106633 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
F5/8 type C domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 145 amino acids
Theoretical weight: 15.85 KDa
Source organism: Yersinia enterocolitica
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A1JSS7 (Residues: 20-159; Coverage: 100%)
Gene name: YE4068
Sequence domains: F5/8 type C domain
Structure domains: Galactose-binding domain-like

Ligands and Environments

1 bound ligand:
Ligand CA 1 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: P212121
Unit cell:
a: 34.765Å b: 42.63Å c: 98.681Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.175 0.172 0.24
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

8 review citations

Carbohydrate-binding domains: multiplicity of biological roles.
Guillén et al. (2010)
7 more

1 mention without citation

The structure of a glycoside hydrolase 29 family member from a rumen bacterium reveals unique, dual carbohydrate-binding domains.
Summers et al. (2016)