› 2jda

X-ray diffraction
1.35Å resolution

Structure of a pectin binding carbohydrate binding module determined in an monoclinic crystal form.

Released:
DOI: 10.2210/pdb2jda/pdb
PDB entry 2jda coloured by chain, front view.
PDB entry 2jda coloured by chain, side view.
PDB entry 2jda coloured by chain, top view.
Source organism: Yersinia enterocolitica
Primary publication:
Identification and characterization of a novel periplasmic polygalacturonic acid binding protein from Yersinia enterolitica.
Abbott DW, Hrynuik S, Boraston AB
J Mol Biol 367 1023-33 (2007)
PMID: 17292916

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-106633 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
F5/8 type C domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 145 amino acids
Theoretical weight: 15.85 KDa
Source organism: Yersinia enterocolitica
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A1JSS7 (Residues: 20-159; Coverage: 100%)
Gene name: YE4068
Sequence domains: F5/8 type C domain
Structure domains: Galactose-binding domain-like

Ligands and Environments

3 bound ligands:
Ligand CA 2 x CA
Ligand GOL 11 x GOL
Ligand SO4 2 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: C2
Unit cell:
a: 111.205Å b: 34.729Å c: 86.711Å
α: 90° β: 120.58° γ: 90°
R-values:
R R work R free
0.145 0.143 0.18
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

8 review citations

Carbohydrate-binding domains: multiplicity of biological roles.
Guillén et al. (2010)
7 more

3 mentions without citation

Crystal structure and oligomeric state of the RetS signaling kinase sensory domain.
Jing et al. (2010)
2 more