› 2job

Solution NMR

Solution structure of an antilipopolysaccharide factor from shrimp and its possible Lipid A binding site

Released:
DOI: 10.2210/pdb2job/pdb
PDB entry 2job coloured by chain, ensemble of 15 models, front view.
PDB entry 2job coloured by chain, ensemble of 15 models, side view.
PDB entry 2job coloured by chain, ensemble of 15 models, top view.
Source organism: Penaeus monodon
Primary publication:
NMR structure of rALF-Pm3, an anti-lipopolysaccharide factor from shrimp: model of the possible lipid A-binding site.
Yang Y, Boze H, Chemardin P, Padilla A, Moulin G, Tassanakajon A, Pugnière M, Roquet F, Destoumieux-Garzón D, Gueguen Y, Bachère E, Aumelas A
Biopolymers 91 207-20 (2009)
PMID: 19107926

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107532 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Anti-lipopolysaccharide factor isoform 3 Chain: A
Molecule details ›
Chain: A
Length: 102 amino acids
Theoretical weight: 11.53 KDa
Source organism: Penaeus monodon
Expression system: Komagataella pastoris
UniProt:
  • Canonical: A5A3I5 (Residues: 22-123; Coverage: 100%)
Gene name: ALFPm3
Sequence domains: Anti-lipopolysaccharide factor/Scygonadin
Structure domains: Double Stranded RNA Binding Domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing
Expression system: Komagataella pastoris

Quick links

Citations

8 review citations

Discovery of immune molecules and their crucial functions in shrimp immunity.
Tassanakajon et al. (2013)
7 more

5 mentions without citation

Marine Arthropods as a Source of Antimicrobial Peptides.
Saucedo-Vázquez et al. (2022)
4 more