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Solution NMR

Solution NMR structure of the folded N-terminal fragment of UPF0291 protein ynzC from Bacillus subtilis. Northeast Structural Genomics target SR384-1-46

Released:
DOI: 10.2210/pdb2jvd/pdb
PDB entry 2jvd coloured by chain, ensemble of 20 models, front view.
PDB entry 2jvd coloured by chain, ensemble of 20 models, side view.
PDB entry 2jvd coloured by chain, ensemble of 20 models, top view.
Source organism: Bacillus subtilis
Primary publication:
Solution NMR structure of the SOS response protein YnzC from Bacillus subtilis.
Aramini JM, Sharma S, Huang YJ, Swapna GV, Ho CK, Shetty K, Cunningham K, Ma LC, Zhao L, Owens LA, Jiang M, Xiao R, Liu J, Baran MC, Acton TB, Rost B, Montelione GT
Proteins 72 526-30 (2008)
PMID: 18431750

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-128379 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
UPF0291 protein YnzC Chain: A
Molecule details ›
Chain: A
Length: 54 amino acids
Theoretical weight: 6.29 KDa
Source organism: Bacillus subtilis
Expression system: Escherichia coli
UniProt:
  • Canonical: O31818 (Residues: 1-46; Coverage: 60%)
Gene names: BSU17880, ynzC
Sequence domains: Bacterial protein of unknown function (DUF896)
Structure domains: Helix hairpin bin

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 94%
Refinement method: simulated annealing
Expression system: Escherichia coli

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Citations

3 citation in other articles

Ab initio modeling led annotation suggests nucleic acid binding function for many DUFs.
Rigden DJ. (2011)
2 more

9 mentions without citation

Chemical shift tensors: theory and application to molecular structural problems.
Facelli JC. (2011)
8 more