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Solution NMR

NMR Structure of YbbR family protein Dhaf_0833 (residues 32-118) from Desulfitobacterium hafniense DCB-2: Northeast Structural Genomics Consortium target DhR29B

Released:
DOI: 10.2210/pdb2kpu/pdb
PDB entry 2kpu coloured by chain, ensemble of 20 models, front view.
PDB entry 2kpu coloured by chain, ensemble of 20 models, side view.
PDB entry 2kpu coloured by chain, ensemble of 20 models, top view.
Source organism: Desulfitobacterium hafniense DCB-2
Primary publication:
Structures of domains I and IV from YbbR are representative of a widely distributed protein family.
Barb AW, Cort JR, Seetharaman J, Lew S, Lee HW, Acton T, Xiao R, Kennedy MA, Tong L, Montelione GT, Prestegard JH
Protein Sci 20 396-405 (2011)
PMID: 21154411

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-110702 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
YbbR family protein Chain: A
Molecule details ›
Chain: A
Length: 96 amino acids
Theoretical weight: 10.79 KDa
Source organism: Desulfitobacterium hafniense DCB-2
Expression system: Escherichia coli
UniProt:
  • Canonical: B8FX10 (Residues: 32-118; Coverage: 20%)
Gene name: Dhaf_0833
Structure domains: RNA Polymerase Alpha Subunit; Chain A, domain 2

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 92%
Refinement method: simulated annealing
Expression system: Escherichia coli

Quick links

Citations

7 review citations

Cyclic di-AMP: another second messenger enters the fray.
Corrigan et al. (2013)
6 more

1 mention without citation

A community resource of experimental data for NMR / X-ray crystal structure pairs.
Everett et al. (2016)