› 2l3u

Solution NMR

Solution Structure of Domain IV from the YbbR family protein of Desulfitobacterium hafniense: Northeast Structural Genomics Consortium target DhR29A

Released:
DOI: 10.2210/pdb2l3u/pdb
PDB entry 2l3u coloured by chain, ensemble of 10 models, front view.
PDB entry 2l3u coloured by chain, ensemble of 10 models, side view.
PDB entry 2l3u coloured by chain, ensemble of 10 models, top view.
Source organism: Desulfitobacterium hafniense DCB-2
Primary publication:
Structures of domains I and IV from YbbR are representative of a widely distributed protein family.
Barb AW, Cort JR, Seetharaman J, Lew S, Lee HW, Acton T, Xiao R, Kennedy MA, Tong L, Montelione GT, Prestegard JH
Protein Sci 20 396-405 (2011)
PMID: 21154411

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-110702 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
YbbR family protein Chain: A
Molecule details ›
Chain: A
Length: 98 amino acids
Theoretical weight: 11.27 KDa
Source organism: Desulfitobacterium hafniense DCB-2
Expression system: Escherichia coli
UniProt:
  • Canonical: B8FX10 (Residues: 321-409; Coverage: 20%)
Gene name: Dhaf_0833
Structure domains: RNA Polymerase Alpha Subunit; Chain A, domain 2

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing
Expression system: Escherichia coli

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Citations

6 review citations

Cyclic di-AMP: another second messenger enters the fray.
Corrigan et al. (2013)
5 more

3 mentions without citation

Cyclic di-AMP, a second messenger of primary importance: tertiary structures and binding mechanisms.
He et al. (2020)
2 more