› 2lj7

Solution NMR

3D solution structure of plant defensin Lc-def

Released:
DOI: 10.2210/pdb2lj7/pdb
PDB entry 2lj7 coloured by chain, ensemble of 20 models, front view.
PDB entry 2lj7 coloured by chain, ensemble of 20 models, side view.
PDB entry 2lj7 coloured by chain, ensemble of 20 models, top view.
Source organism: Lens culinaris subsp. culinaris
Primary publication:
Heterologous expression and solution structure of defensin from lentil Lens culinaris.
Shenkarev ZO, Gizatullina AK, Finkina EI, Alekseeva EA, Balandin SV, Mineev KS, Arseniev AS, Ovchinnikova TV
Biochem Biophys Res Commun 451 252-7 (2014)
PMID: 25086358

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-109837 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Defensin Lc-def Chain: A
Molecule details ›
Chain: A
Length: 47 amino acids
Theoretical weight: 5.46 KDa
Source organism: Lens culinaris subsp. culinaris
Expression system: Escherichia coli
UniProt:
  • Canonical: B3F051 (Residues: 28-74; Coverage: 100%)
Sequence domains: Gamma-thionin family
Structure domains: Knottin, scorpion toxin-like

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 63%
Refinement method: simulated annealing
Expression system: Escherichia coli

Quick links

Citations

3 review citations

Antimicrobial peptides in 2014.
Wang et al. (2015)
2 more

1 mention without citation

Plant Defensins from a Structural Perspective.
Kovaleva et al. (2020)