› 2lvh

Solution NMR

Solution structure of the zinc finger AFV1p06 protein from the hyperthermophilic archaeal virus AFV1

Released:
DOI: 10.2210/pdb2lvh/pdb
PDB entry 2lvh coloured by chain, ensemble of 10 models, front view.
PDB entry 2lvh coloured by chain, ensemble of 10 models, side view.
PDB entry 2lvh coloured by chain, ensemble of 10 models, top view.
Source organism: Acidianus filamentous virus 1 (isolate Yellowstone)
Primary publication:
Solution structure of an archaeal DNA binding protein with an eukaryotic zinc finger fold.
Guillière F, Danioux C, Jaubert C, Desnoues N, Delepierre M, Prangishvili D, Sezonov G, Guijarro JI
PLoS One 8 e52908 (2013)
PMID: 23326363

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-180701 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative zinc finger protein ORF59a Chain: A
Molecule details ›
Chain: A
Length: 59 amino acids
Theoretical weight: 7.01 KDa
Source organism: Acidianus filamentous virus 1 (isolate Yellowstone)
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q70LE5 (Residues: 1-59; Coverage: 100%)
Gene name: ORF59a
Structure domains: Classic Zinc Finger

Ligands and Environments

1 bound ligand:
Ligand ZN 1 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 86%
Refinement method: simulated annealing, torsion angle dynamics
Expression system: Escherichia coli BL21

Quick links

Citations

3 review citations

The wonderful world of archaeal viruses.
Prangishvili D. (2013)
2 more

3 mentions without citation

Structure and mechanisms of viral transcription factors in archaea.
Sheppard et al. (2017)
2 more