› 2m5u

Solution NMR

NMR structure of the P4 hairpin of the CPEB3 ribozyme

Released:
DOI: 10.2210/pdb2m5u/pdb
PDB entry 2m5u coloured by chain, ensemble of 15 models, front view.
PDB entry 2m5u coloured by chain, ensemble of 15 models, side view.
PDB entry 2m5u coloured by chain, ensemble of 15 models, top view.
Source organism: Synthetic construct
Primary publication:
Solution structure and metal ion binding sites of the human CPEB3 ribozyme's P4 domain.
Skilandat M, Rowinska-Zyrek M, Sigel RK
J Biol Inorg Chem 19 903-12 (2014)
PMID: 24652468

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196494 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
RNA_(5'-R(*GP*GP*CP*AP*GP*AP*UP*UP*CP*UP*GP*GP*UP*GP*AP*AP*UP*CP*UP*GP*CP*C)-3') Chain: A
Molecule details ›
Chain: A
Length: 22 nucleotides
Theoretical weight: 7.05 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 42%
Refinement method: molecular dynamics
Expression system: Not provided

Quick links

Citations

3 citation in other articles

Secondary structure confirmation and localization of Mg2+ ions in the mammalian CPEB3 ribozyme.
Skilandat et al. (2016)
2 more

1 mention without citation

F-RAG: Generating Atomic Coordinates from RNA Graphs by Fragment Assembly.
Jain et al. (2017)