› 2n2z

Solution NMR

NMR spatial structure of nonspecific lipid transfer protein from the dill Anethum graveolens L.

Released:
DOI: 10.2210/pdb2n2z/pdb
PDB entry 2n2z coloured by chain, ensemble of 10 models, front view.
PDB entry 2n2z coloured by chain, ensemble of 10 models, side view.
PDB entry 2n2z coloured by chain, ensemble of 10 models, top view.
Source organism: Anethum graveolens
Primary publication:
A novel lipid transfer protein from the dill Anethum graveolens L.: isolation, structure, heterologous expression, and functional characteristics.
Melnikova DN, Mineev KS, Finkina EI, Arseniev AS, Ovchinnikova TV
J Pept Sci 22 59-66 (2016)
PMID: 26680443

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-100954 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Non-specific lipid-transfer protein Chain: A
Molecule details ›
Chain: A
Length: 93 amino acids
Theoretical weight: 9.54 KDa
Source organism: Anethum graveolens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A0B4JDK1 (Residues: 30-122; Coverage: 90%)
Sequence domains: Protease inhibitor/seed storage/LTP family
Structure domains: Plant lipid-transfer and hydrophobic proteins

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 93%
Refinement method: simulated annealing
Expression system: Escherichia coli BL21(DE3)

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Citations

3 review citations

Isolation of antimicrobial peptides from different plant sources: Does a general extraction method exist?
Barashkova et al. (2020)
2 more

2 mentions without citation

Effects of Salinity and Abscisic Acid on Lipid Transfer Protein Accumulation, Suberin Deposition and Hydraulic Conductance in Pea Roots.
Akhiyarova et al. (2021)
1 more